Genomic Location: not available for this species
NR annotation: CAB4026267.1, RNA-directed DNA polymerase from transposon X-element [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4026267.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P00860 | Ornithine decarboxylase OS=Mus musculus OX=10090 GN=Odc1 PE=1 SV=2 |
| P27117 | Ornithine decarboxylase OS=Bos taurus OX=9913 GN=ODC1 PE=2 SV=1 |
| Q9I8S4 | Antizyme inhibitor 2 OS=Xenopus laevis OX=8355 GN=azin2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000407 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF02784 all species → | Orn_Arg_deC_N | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | Domain | Interproscan |
| PF03372 all species → | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036691 all species → | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR029066 all species → | Homologous_superfamily | PLP-binding barrel | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR002433 all species → | Family | Ornithine decarboxylase | Interproscan |
| IPR022644 all species → | Domain | Orn/DAP/Arg decarboxylase 2, N-terminal | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR005135 all species → | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR000183 all species → | Family | Ornithine/DAP/Arg decarboxylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11482 all species → | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004586 all species → | Molecular Function | ornithine decarboxylase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006596 all species → | Biological Process | polyamine biosynthetic process | Interproscan |
| GO:0033387 all species → | Biological Process | putrescine biosynthetic process from ornithine | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
CAB4026267.1.Transcript abundance of CAB4026267.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
