Genomic Location: not available for this species
NR annotation: CAB4026617.1, 40S ribosomal S11 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4026617.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3T0V4 | Small ribosomal subunit protein uS17 OS=Bos taurus OX=9913 GN=RPS11 PE=2 SV=3 |
| P62280 | Small ribosomal subunit protein uS17 OS=Homo sapiens OX=9606 GN=RPS11 PE=1 SV=3 |
| P61270 | Small ribosomal subunit protein uS17 OS=Macaca fascicularis OX=9541 GN=RPS11 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007116 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16205 all species → | Ribosomal_S17_N | Ribosomal_S17 N-terminal | Family | Interproscan |
| PF00366 all species → | Ribosomal_S17 | Ribosomal protein S17 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019979 all species → | Conserved_site | Small ribosomal subunit protein uS17, conserved site | Interproscan |
| IPR028333 all species → | Family | Small ribosomal subunit protein uS17, archaeal/eukaryotic | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR000266 all species → | Family | Small ribosomal subunit protein uS17 | Interproscan |
| IPR032440 all species → | Domain | Small ribosomal subunit protein uS17, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10744 all species → | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0022627 all species → | Cellular Component | cytosolic small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02949 | RP-S11e, RPS11; small subunit ribosomal protein S11e | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of CAB4026617.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
