Genomic Location: not available for this species
NR annotation: CAB4026713.1, RMD5 homolog A-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4026713.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6GLP4 | E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1 |
| Q640V2 | E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 SV=1 |
| Q9H871 | E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006522 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13445 all species → | zf-RING_UBOX | RING-type zinc-finger | Domain | Interproscan |
| PF10607 all species → | CTLH | CTLH/CRA C-terminal to LisH motif domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044063 all species → | Domain | Gid-type RING finger domain | Interproscan |
| IPR006595 all species → | Domain | CTLH, C-terminal LisH motif | Interproscan |
| IPR045098 all species → | Family | Fyv10 family | Interproscan |
| IPR013144 all species → | Domain | CRA domain | Interproscan |
| IPR027370 all species → | Domain | Zinc finger, RING-type, eukaryotic | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR024964 all species → | Domain | CTLH/CRA C-terminal to LisH motif domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12170 all species → | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0034657 all species → | Cellular Component | GID complex | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23333 | RMND5; E3 ubiquitin-protein transferase RMND5 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB4026713.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 13.47 | 44.86 | |
| apical branchlet · Temperature treatment at T0 | 6 | 2 | 1.73 | 8.30 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.24 | 6.20 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.10 | 4.40 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
