Genomic Location: not available for this species
NR annotation: CAB4026902.1, plexin-A1 isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4026903.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9UIW2 | Plexin-A1 OS=Homo sapiens OX=9606 GN=PLXNA1 PE=1 SV=3 |
| P70206 | Plexin-A1 OS=Mus musculus OX=10090 GN=Plxna1 PE=1 SV=1 |
| Q07E01 | Hepatocyte growth factor receptor OS=Ornithorhynchus anatinus OX=9258 GN=MET PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001614 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01403 all species → | Sema | Sema domain | Repeat | Interproscan |
| PF01437 all species → | PSI | Plexin repeat | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR031148 all species → | Family | Plexin family | Interproscan |
| IPR001627 all species → | Domain | Sema domain | Interproscan |
| IPR036352 all species → | Homologous_superfamily | Sema domain superfamily | Interproscan |
| IPR002165 all species → | Repeat | Plexin repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22625 all species → | PLEXIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0002116 all species → | Cellular Component | semaphorin receptor complex | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0017154 all species → | Molecular Function | semaphorin receptor activity | Interproscan |
| GO:0030334 all species → | Biological Process | regulation of cell migration | Interproscan |
| GO:0071526 all species → | Biological Process | semaphorin-plexin signaling pathway | Interproscan |
| GO:1902287 all species → | Biological Process | semaphorin-plexin signaling pathway involved in axon guidance | Interproscan |
CAB4026903.1.Transcript abundance of CAB4026903.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
