Genomic Location: not available for this species
NR annotation: CAB4027023.1, rRNA 2 -O-methyltransferase fibrillarin, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4027023.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9W1V3 | rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1 |
| Q8I1F4 | rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1 |
| P22232 | rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis OX=8355 GN=fbl PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007026 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01269 all species → | Fibrillarin | Fibrillarin | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR000692 all species → | Family | rRNA 2'-O-methyltransferase fibrillarin-like | Interproscan |
| IPR020813 all species → | Conserved_site | Fibrillarin, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10335 all species → | RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0000494 all species → | Biological Process | box C/D sno(s)RNA 3'-end processing | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0008649 all species → | Molecular Function | rRNA methyltransferase activity | Interproscan |
| GO:0015030 all species → | Cellular Component | Cajal body | Interproscan |
| GO:0031167 all species → | Biological Process | rRNA methylation | Interproscan |
| GO:0031428 all species → | Cellular Component | box C/D methylation guide snoRNP complex | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:1990259 all species → | Molecular Function | histone H2AQ104 methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14563 | NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin | EC:2.1.1.- | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB4027023.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
