Genomic Location: not available for this species
NR annotation: CAB4027095.1, methylthioribulose-1-phosphate dehydratase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4027095.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0VCJ2 | Methylthioribulose-1-phosphate dehydratase OS=Bos taurus OX=9913 GN=APIP PE=2 SV=1 |
| Q9WVQ5 | Methylthioribulose-1-phosphate dehydratase OS=Mus musculus OX=10090 GN=Apip PE=1 SV=1 |
| Q5ZLP2 | Methylthioribulose-1-phosphate dehydratase OS=Gallus gallus OX=9031 GN=APIP PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004460 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00596 all species → | Aldolase_II | Class II Aldolase and Adducin N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001303 all species → | Domain | Class II aldolase/adducin N-terminal | Interproscan |
| IPR036409 all species → | Homologous_superfamily | Class II aldolase/adducin N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10640 all species → | METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0019509 all species → | Biological Process | L-methionine salvage from methylthioadenosine | Interproscan |
| GO:0046570 all species → | Molecular Function | methylthioribulose 1-phosphate dehydratase activity | Interproscan |
CAB4027095.1.Transcript abundance of CAB4027095.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
