Gene detail

Detailed information of CAB4027267.1 in Paramuricea clavata

Genomic Location: pcla8_s015565:4442...8014
NR annotation: CAB4027267.1, soluble calcium-activated nucleotidase 1 isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A061716

CGTTTTCATGGGGGGTGGTCGCTTTGGCGTTCCATTGTGCCACGAATGCTTGGCCTTGACGCTTTTTGGCTTGCCAAATGAATTGCCATAGAAAGTTTTTTTGCCTTTTATAAAAGGCTATGTACAATAAACTTTCCAAGCCAAACCACTCACCAGAAAGTGGAAATATAATAATCTCGTTCAGGAACAAAGTTCGCCGAATGCCAATGGATAGAAAGTCGAAAGTTTGCGTTTTATGTGGTGTTTTGATGACAAGCTTGTTTTATGTTGCTTACGCATTACATGTGAATTTTGGAGGATATTCGCTAACAAGAACGCGTGATATTGCGACTACATTAGAACAGTCTTGTCCTCTGACGAAACCTGTAAAAACAAAAGACGGGGCGATTTCGTATCGAATTGGAATCATTTCAGACTTGGACGAAAACTCCAAACATCCCAATAAATTGAATACATGGGTTAGTTACTTTAAACGTGGCAAATTAGTTTTAAATGCCAATGGTGGAGCGAATAAAGTTAGTGTACTATGGGACGATAACAATGTGGAGCTCACATCTTCGTTAGCGCAAGGCGGACGTGGTATGGAGCTATCCGAGCTTGTTTGCTTTGATGGAAAAATTTTAAGCCTTGACGATCGGACTGGAGTAGTCTATCAAATTTTCGACCGACATGTGTCGCCCTGGGTTATTATGGCCGACGGCGATGGCCAAGAGGCGAAAGGTTTCAAAGGGGAGTGGTCCACGGTTAAAGATGGACAACTTTACATCGGTGGTCTTGGTAAAGAATGGACGTCGAAAACTGGCGAGATTTTGAATTTCAATCCACAATATGTCAAAATCGTTGGTCCCAGTGGCGCGATGACACACGTTAGCTGGGTTGATAAGTATAGAAAGTTGTTAAAAACAGCTGGCATTGAACCACCTGGCTACTTGATTCACGAGTCGGCCGTTTGGAGTAGTGTTAATAAAAAATGGTTTTTCCTACCACGCCGGGCTAGCAAATTAAAATACGACGATAAAGAAGACGAGCGTCATGGTACAAATATGCTTCTGTCGTGCAGCGAAGATTTTAGTGGCTGCGATCGCACCCTCATTGGTCCACTTAATACGACGCACGGTTTCTCCTCGTTTAAGTTCATCCCGGGCACTAACGACCAAGAAATTGTGGCGTTAAAAACGCAAGAAGTGGGCGGGCAGATTGCGTCGTACATCATGGCATTTGACTTGAGTGGCAGAATATTGATGAGTGAACAGAAAATTCCTGGTAGCTATAAATTTGAAGGAATCGAGTTTTTATGATCATTGACTGTCCCTTTAAGGCTGTTTACATGGACTCTACCAGCATACCCATATTCATGATGTCATTATATATGACTTGCTAGCATCTCAGTCAATATGTGATGCTTATGTGAACTAAGAATATGtaaacttaaaatatatttaggaTTTGGGGCATCTTGCTTGGTAGGGGGCCTGAGGGTTGAAAGTTCAATTCCAGCCAGAGGGCCTAAAGTTTCCTCCATAACCCTCTGTTGGAGTCACCGTAACTCCATGTAAACAGACCCTAAATGTGGGGTGTTATAGCAAgacaattttaatattttgtattagCCAAACTGTCCTGGGTCTAATTTACCCTGTGATCAGAGTTTCCAAAGAGAATAGAGACTCTGCAGAATTTGTATAATTTCCTATTTTAACTGGTGTTAGGATAGGAAACACTCTATTAAAGCCTGATTTGACAACGGCAAAATTCGTCATGCAAAATTGTGTCTGCAAAATATGGATGATTGCACATGAGTGATTCTATTGAATTTTGTCACTTTATTTGCTTTCGCAGTGAGTAGAACTGACGTCTTCTCACTGGTGTAGCAAAATGTAACTTTACTGCGTATGCACAAATTCATTTCACATTTTGCTGAAAAAAGTGCTTGTGGAATCAGATCTATAGACCATTAGTGGCGTAGCCAgtccgacaatttagtcccgctatgcaaattcaaaataattatcattattcatttctttagaaattgattgttttcacagtcaacaaacacgaaaatatttgcatagcgggactaaatcttcgggctggctacgctactgttaGTGCAGTAGATGGAATGAGTTAGCTTGCTACATTATGCTGGACAATGCAGTGAGTTgtgaccattgaactataaataaactgaaaggctaactgctatgatgaaggcctatggtTTGATGAAGCCGAAATAGTTTTtgtgagttatgagcagaaatacttgaccccaaacgtcgggctatatatcaaattgaagctattgaaaattgctattcggtgtggaaatttcaagacttcagcgaaaagaaaaatattttaaaaaatacaaaaacaactgcaaaacggcaaattttcggtaattatgtttgtagtttttcaatttgatatatagccgaacgttcagtgttgagtatttccgctcataactcagaaaaactaaaatacactggcttcaatttcccccccccccccgagttagccttccagtttatttatagttcaatggttgtGACATGTTAGGTTTACCGGATGAATTTGGAACTATACAAAAACTCGTACAGTTCCACGGAattcaaaattgtcaatatTGTAATCATATAGTCTTTCTCTGTTTTAGTAATTATTATTTAAGCATACTTTTGCAGTCTATTAGCCagggtagggataaaacgctgaaactgaatcgcggaaacggaaactgaaagcggaaactgaaatggggataaaacgctgaaatgggggtaaaacgctgaaatggggataaaacatAGTCTTTCTCTGTTTTAGTAATTATTATTTAAGCATACTTTTGCAGTCTATTAGCCagggtagggataaaacgctgaaactgaatcgcggaaacggaaactgaaagcggaaactgaaatggggatacaacactgaaatggggataaaacgctgaaatgggggtaaaacgctgaattCATCTATTAGCCagggtagggataaaacgctgaaactgaatcgcggaaacggaaactgaaagcggaaactgaaatggggataaaacgctgaaatgggggtaaaacactgaaagcggaaactgaaatggggataaaacgctgaaatgggggtaaaacgctgaaatggggataaaacgctgaaatggggataaaatgctgaaatggggataaaatgctGAAATGGGGGTAGAACACTGAATTCATCAATGGGGATaaaaatttaatcgaattcgttgtttgctagaccattgcgaacacatgtaatttgcctataaaactgaataaatataagaaagaagttcctggtaaaatgacaaccacaaattttcgaagaacgAATATAATCTGACAGTTTAtcttttattaataatgtaaTCTACAATTTTCTCCATATAACTTCGAACTCAACTTTTTGTGATAGCATACTATCTTCACACTGCCATATGGCTGGTATTTTGGGTGTAaaaccggtgtcacaggaatttCCCGGGAATTGTCAGGACACGTGTCTAAATCggaaaaaacgtttttcttctCCTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4Y7	Soluble calcium-activated nucleotidase 1 OS=Rattus norvegicus OX=10116 GN=Cant1 PE=1 SV=1
Q8WVQ1	Soluble calcium-activated nucleotidase 1 OS=Homo sapiens OX=9606 GN=CANT1 PE=1 SV=1
Q8VCF1	Soluble calcium-activated nucleotidase 1 OS=Mus musculus OX=10090 GN=Cant1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008905 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06079 all species →	Apyrase	Apyrase	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009283 all species →	Family	Apyrase	Interproscan
IPR036258 all species →	Homologous_superfamily	Apyrase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13023 all species →	APYRASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004382 all species →	Molecular Function	GDP phosphatase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0017110 all species →	Molecular Function	nucleoside diphosphate phosphatase activity	Interproscan
GO:0030166 all species →	Biological Process	proteoglycan biosynthetic process	Interproscan
GO:0045134 all species →	Molecular Function	UDP phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12304	CANT1; soluble calcium-activated nucleotidase 1	EC:3.6.1.6	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4027267.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

18TPM > 0

4Conditions

59.1Max TPM

11.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	9.25	20.76
apical branchlet · Temperature treatment at T0	6	6	16.98	59.07
apical branchlet · Temperature treatment at T25	5	4	10.54	15.85
apical branchlet · Control at T0	4	3	7.72	22.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	20.76
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	11.49
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	11.29
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.53
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	3.45
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	59.07
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	15.90
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	10.17
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	6.14
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	5.69
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	4.90
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	15.85
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	14.12
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	11.62
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	11.13
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	22.52
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	5.36
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	2.99
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.