Genomic Location: not available for this species
NR annotation: CAB4027313.1, DNA polymerase epsilon catalytic subunit A, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4027313.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q07864 | DNA polymerase epsilon catalytic subunit A OS=Homo sapiens OX=9606 GN=POLE PE=1 SV=5 |
| Q9WVF7 | DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3 |
| Q9VCN1 | DNA polymerase epsilon catalytic subunit 1 OS=Drosophila melanogaster OX=7227 GN=PolE1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002978 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00136 all species → | DNA_pol_B | DNA polymerase family B | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042087 all species → | Homologous_superfamily | DNA polymerase family B, thumb domain | Interproscan |
| IPR023211 all species → | Homologous_superfamily | DNA polymerase, palm domain superfamily | Interproscan |
| IPR006134 all species → | Domain | DNA-directed DNA polymerase, family B, multifunctional domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR029703 all species → | Family | DNA polymerase epsilon catalytic subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10670 all species → | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0000278 all species → | Biological Process | mitotic cell cycle | Interproscan |
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006272 all species → | Biological Process | leading strand elongation | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0006287 all species → | Biological Process | base-excision repair, gap-filling | Interproscan |
| GO:0006297 all species → | Biological Process | nucleotide-excision repair, DNA gap filling | Interproscan |
| GO:0008310 all species → | Molecular Function | single-stranded DNA 3'-5' DNA exonuclease activity | Interproscan |
| GO:0008622 all species → | Cellular Component | epsilon DNA polymerase complex | Interproscan |
| GO:0045004 all species → | Biological Process | DNA replication proofreading | Interproscan |
CAB4027313.1.Transcript abundance of CAB4027313.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
