Gene detail

Detailed information of CAB4027592.1 in Paramuricea clavata

Genomic Location: pcla8_s015784:10340...11287
NR annotation: CAB4027592.1, ketohexokinase isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02974	Ketohexokinase OS=Rattus norvegicus OX=10116 GN=Khk PE=1 SV=1
P97328	Ketohexokinase OS=Mus musculus OX=10090 GN=Khk PE=1 SV=1
P50053	Ketohexokinase OS=Homo sapiens OX=9606 GN=KHK PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005335 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00294 all species →	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052562 all species →	Family	Ketohexokinase-related	Interproscan
IPR034093 all species →	Family	Ketohexokinase	Interproscan
IPR002173 all species →	Conserved_site	Carbohydrate/purine kinase, PfkB, conserved site	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR011611 all species →	Domain	Carbohydrate kinase PfkB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42774 all species →	PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004454 all species →	Molecular Function	ketohexokinase activity	Interproscan
GO:0006000 all species →	Biological Process	fructose metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00846	KHK; ketohexokinase	EC:2.7.1.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4027592.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

50.7Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	4.03	21.96
apical branchlet · Temperature treatment at T0	6	3	8.80	50.70
apical branchlet · Temperature treatment at T25	5	1	0.15	0.75
apical branchlet · Control at T0	4	1	0.05	0.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	21.96
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.30
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.60
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.34
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	50.70
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.12
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.75
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.20
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.