Genomic Location: not available for this species
NR annotation: CAB4027968.1, SDA1 homolog, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4027968.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7S6A5 | Protein SDA1 homolog OS=Nematostella vectensis OX=45351 GN=sdad1 PE=3 SV=1 |
| A5D7C2 | Protein SDA1 homolog OS=Bos taurus OX=9913 GN=SDAD1 PE=2 SV=1 |
| Q6NV26 | Protein SDA1 homolog OS=Danio rerio OX=7955 GN=sdad1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004569 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08158 all species → | SDA1_HEAT | SDA1, HEAT repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027312 all species → | Family | Sda1 | Interproscan |
| IPR012977 all species → | Domain | SDA1, N-terminal | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12730 all species → | HSDA/SDA1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000055 all species → | Biological Process | ribosomal large subunit export from nucleus | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0042273 all species → | Biological Process | ribosomal large subunit biogenesis | Interproscan |
CAB4027968.1.Transcript abundance of CAB4027968.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
