Genomic Location: not available for this species
NR annotation: CAB4028357.1, clathrin heavy chain 1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4028357.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P49951 | Clathrin heavy chain 1 OS=Bos taurus OX=9913 GN=CLTC PE=1 SV=1 |
| Q00610 | Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5 |
| Q68FD5 | Clathrin heavy chain 1 OS=Mus musculus OX=10090 GN=Cltc PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005110 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09268 all species → | Clathrin-link | Clathrin, heavy-chain linker | Repeat | Interproscan |
| PF13838 all species → | Clathrin_H_link | Clathrin-H-link | Repeat | Interproscan |
| PF01394 all species → | Clathrin_propel | Clathrin propeller repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015348 all species → | Domain | Clathrin, heavy chain, linker, core motif | Interproscan |
| IPR022365 all species → | Repeat | Clathrin, heavy chain, propeller repeat | Interproscan |
| IPR012331 all species → | Homologous_superfamily | Clathrin, heavy chain, linker | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR016025 all species → | Homologous_superfamily | Clathrin heavy chain, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10292 all species → | CLATHRIN HEAVY CHAIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030130 all species → | Cellular Component | clathrin coat of trans-Golgi network vesicle | Interproscan |
| GO:0030132 all species → | Cellular Component | clathrin coat of coated pit | Interproscan |
| GO:0006898 all species → | Biological Process | receptor-mediated endocytosis | Interproscan |
| GO:0032051 all species → | Molecular Function | clathrin light chain binding | Interproscan |
| GO:0045334 all species → | Cellular Component | clathrin-coated endocytic vesicle | Interproscan |
| GO:0071439 all species → | Cellular Component | clathrin complex | Interproscan |
CAB4028357.1.Transcript abundance of CAB4028357.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
