Genomic Location: not available for this species
NR annotation: CAB4028535.1, gastric intrinsic factor-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4028535.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9W4K2 | Uncharacterized protein CG3556 OS=Drosophila melanogaster OX=7227 GN=CG3556 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001572 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01122 all species → | Cobalamin_bind | Eukaryotic cobalamin-binding protein | Repeat | Interproscan |
| PF14478 all species → | DUF4430 | Domain of unknown function (DUF4430) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002157 all species → | Family | Cobalamin (vitamin B12)-binding protein | Interproscan |
| IPR008930 all species → | Homologous_superfamily | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid | Interproscan |
| IPR051588 all species → | Family | Eukaryotic Cobalamin Transport | Interproscan |
| IPR027954 all species → | Domain | Transcobalamin-like, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10559 all species → | TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015889 all species → | Biological Process | cobalamin transport | Interproscan |
| GO:0031419 all species → | Molecular Function | cobalamin binding | Interproscan |
CAB4028535.1.Transcript abundance of CAB4028535.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
