Genomic Location: not available for this species
NR annotation: CAB4028554.1, cytosolic 5 -nucleotidase 3-like isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4028554.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7ZWS2 | 7-methylguanosine phosphate-specific 5'-nucleotidase A OS=Xenopus laevis OX=8355 GN=Nt5c3b-a PE=2 SV=2 |
| Q2TAG6 | 7-methylguanosine phosphate-specific 5'-nucleotidase B OS=Xenopus laevis OX=8355 GN=Nt5c3b-b PE=2 SV=1 |
| Q5ZID6 | Cytosolic 5'-nucleotidase 3A OS=Gallus gallus OX=9031 GN=NT5C3A PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003791 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05822 all species → | UMPH-1 | Pyrimidine 5'-nucleotidase (UMPH-1) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006434 all species → | Family | Pyrimidine 5'-nucleotidase, eukaryotic | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR023214 all species → | Homologous_superfamily | HAD superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13045 all species → | 5'-NUCLEOTIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008253 all species → | Molecular Function | 5'-nucleotidase activity | Interproscan |
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24242 | NT5C3; 7-methylguanosine nucleotidase | EC:3.1.3.91 | Pyrimidine metabolism | ko00240 | deepkoala |
Transcript abundance of CAB4028554.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
