Genomic Location: not available for this species
NR annotation: CAB4028901.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4028901.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5BL56 | HMG box-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=hmgxb4 PE=2 SV=1 |
| Q6WKW9 | HMG box-containing protein 4 OS=Xenopus laevis OX=8355 GN=hmgxb4 PE=1 SV=1 |
| Q9UGU5 | HMG domain-containing protein 4 OS=Homo sapiens OX=9606 GN=HMGXB4 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008464 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR042477 all species → | Family | HMG domain-containing protein 4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46584 all species → | HMG DOMAIN-CONTAINING PROTEIN 4 | Interproscan |
CAB4028901.1 in Paramuricea clavata.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11298 | HMGXB4, HMG2L1; HMG domain-containing protein 4 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4028901.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
