Genomic Location: not available for this species
NR annotation: CAB4029031.1, Vesicle-associated membrane 3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4029031.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q15836 | Vesicle-associated membrane protein 3 OS=Homo sapiens OX=9606 GN=VAMP3 PE=1 SV=3 |
| Q4R8T0 | Vesicle-associated membrane protein 3 OS=Macaca fascicularis OX=9541 GN=VAMP3 PE=3 SV=1 |
| Q2KJD2 | Vesicle-associated membrane protein 3 OS=Bos taurus OX=9913 GN=VAMP3 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001916 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00957 all species → | Synaptobrevin | Synaptobrevin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001388 all species → | Family | Synaptobrevin-like | Interproscan |
| IPR042855 all species → | Domain | v-SNARE, coiled-coil homology domain | Interproscan |
| IPR016444 all species → | Family | Synaptobrevin/Vesicle-associated membrane protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45701 all species → | SYNAPTOBREVIN FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0005484 all species → | Molecular Function | SNAP receptor activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006906 all species → | Biological Process | vesicle fusion | Interproscan |
| GO:0019905 all species → | Molecular Function | syntaxin binding | Interproscan |
| GO:0031201 all species → | Cellular Component | SNARE complex | Interproscan |
CAB4029031.1.Transcript abundance of CAB4029031.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
