Genomic Location: not available for this species
NR annotation: CAB4029302.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4029302.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9NZ43 | Vesicle transport protein USE1 OS=Homo sapiens OX=9606 GN=USE1 PE=1 SV=2 |
| Q9CQ56 | Vesicle transport protein USE1 OS=Mus musculus OX=10090 GN=Use1 PE=1 SV=1 |
| Q7ZTY7 | Vesicle transport protein USE1 OS=Danio rerio OX=7955 GN=use1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003495 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09753 all species → | Use1 | Membrane fusion protein Use1 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019150 all species → | Family | Vesicle transport protein, Use1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13050 all species → | USE1-LIKE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005484 all species → | Molecular Function | SNAP receptor activity | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0006890 all species → | Biological Process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Interproscan |
| GO:0031201 all species → | Cellular Component | SNARE complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08507 | USE1; unconventional SNARE in the endoplasmic reticulum protein 1 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB4029302.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
