Genomic Location: not available for this species
NR annotation: CAB4029465.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4029465.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000204 (this species only) |
CAB4029465.1. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR050828 all species → | Family | C-type lectin and matrix domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45710 all species → | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 | Interproscan |
CAB4029465.1. This gene does have a gene model — the search simply returned no hit.CAB4029465.1.Transcript abundance of CAB4029465.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 1.14 | 3.32 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 0.82 | 3.92 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 10.65 | 25.55 | |
| apical branchlet · Control at T0 | 4 | 3 | 5.24 | 10.21 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
