Genomic Location: not available for this species
NR annotation: CAB4029551.1, 3-Beta-hydroxysteroid-delta(8), delta(7)-isomerase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4029551.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009773 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05241 all species → | EBP | EXPERA (EXPanded EBP superfamily) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033118 all species → | Domain | EXPERA domain | Interproscan |
| IPR007905 all species → | Family | Emopamil-binding protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14207 all species → | STEROL ISOMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000247 all species → | Molecular Function | C-8 sterol isomerase activity | Interproscan |
| GO:0004769 all species → | Molecular Function | steroid delta-isomerase activity | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0006695 all species → | Biological Process | cholesterol biosynthetic process | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016125 all species → | Biological Process | sterol metabolic process | Interproscan |
| GO:0016126 all species → | Biological Process | sterol biosynthetic process | Interproscan |
| GO:0047750 all species → | Molecular Function | cholestenol delta-isomerase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22904 | PLPP6; presqualene diphosphate phosphatase | EC:3.1.3.- | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of CAB4029551.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
