Genomic Location: pcla8_s017627:121...2246
NR annotation: CAB4029841.1, E3 ubiquitin- ligase NRDP1 [Paramuricea clavata]
| CDS | |||||
| PACLA_8A032879 | |||||
| Transcript |
| rna-PACLA_8A032879 |
| Protein |
| CAB4029841.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|U-box |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13418 | Kelch_4 | Galactose oxidase, central domain | Repeat | Interproscan |
| PF01344 | Kelch_1 | Kelch motif | Repeat | Interproscan |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| PF02176 | zf-TRAF | TRAF-type zinc finger | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051746 | Family | Kelch domain-containing protein 8 | Interproscan |
| IPR015915 | Homologous_superfamily | Kelch-type beta propeller | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR006652 | Repeat | Kelch repeat type 1 | Interproscan |
| IPR001293 | Domain | Zinc finger, TRAF-type | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46260 | RING-TYPE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K15682 | PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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