Genomic Location: not available for this species
NR annotation: CAB4030314.1, phosphomannomutase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4030314.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P37755 | Phosphomannomutase OS=Escherichia coli OX=562 GN=manB PE=3 SV=1 |
| O85343 | Phosphomannomutase OS=Escherichia coli O157:H7 OX=83334 GN=manB PE=3 SV=1 |
| P24175 | Phosphomannomutase OS=Escherichia coli (strain K12) OX=83333 GN=manB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0019280 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02880 all species → | PGM_PMM_III | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | Domain | Interproscan |
| PF00483 all species → | NTP_transferase | Nucleotidyl transferase | Family | Interproscan |
| PF02879 all species → | PGM_PMM_II | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | Domain | Interproscan |
| PF02878 all species → | PGM_PMM_I | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | Domain | Interproscan |
| PF01050 all species → | MannoseP_isomer | Mannose-6-phosphate isomerase | Family | Interproscan |
| PF00408 all species → | PGM_PMM_IV | Phosphoglucomutase/phosphomannomutase, C-terminal domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049577 all species → | Domain | GDP-mannose pyrophosphorylase, N-terminal domain | Interproscan |
| IPR006375 all species → | Family | Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Interproscan |
| IPR005846 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain III | Interproscan |
| IPR005841 all species → | Family | Alpha-D-phosphohexomutase superfamily | Interproscan |
| IPR016066 all species → | Conserved_site | Alpha-D-phosphohexomutase, conserved site | Interproscan |
| IPR005835 all species → | Domain | Nucleotidyl transferase domain | Interproscan |
| IPR005845 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain II | Interproscan |
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR016055 all species → | Homologous_superfamily | Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III | Interproscan |
| IPR051161 all species → | Family | Mannose-6-phosphate isomerase type 2 | Interproscan |
| IPR014710 all species → | Homologous_superfamily | RmlC-like jelly roll fold | Interproscan |
| IPR005844 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain I | Interproscan |
| IPR036900 all species → | Homologous_superfamily | Alpha-D-phosphohexomutase, C-terminal domain superfamily | Interproscan |
| IPR001538 all species → | Domain | Mannose-6-phosphate isomerase, type II, C-terminal | Interproscan |
| IPR011051 all species → | Homologous_superfamily | RmlC-like cupin domain superfamily | Interproscan |
| IPR005843 all species → | Domain | Alpha-D-phosphohexomutase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46390 all species → | MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004475 all species → | Molecular Function | mannose-1-phosphate guanylyltransferase (GTP) activity | Interproscan |
| GO:0000271 all species → | Biological Process | polysaccharide biosynthetic process | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0016868 all species → | Molecular Function | intramolecular phosphotransferase activity | Interproscan |
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0009298 all species → | Biological Process | GDP-mannose biosynthetic process | Interproscan |
| GO:0071704 all species → | Biological Process | obsolete organic substance metabolic process | Interproscan |
| GO:0005976 all species → | Biological Process | polysaccharide metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16011 | algA, xanB, rfbA, wbpW, pslB; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase | EC:2.7.7.13 EC:5.3.1.8 | Biofilm formation - Pseudomonas aeruginosa | ko02025 | deepkoala |
Transcript abundance of CAB4030314.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
