Genomic Location: pcla8_s018252:3...3686
NR annotation: CAB4030581.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| CDS |
| PACLA_8A056045 |
| Transcript |
| rna-PACLA_8A056045 |
| Protein |
| CAB4030581.1 |
| UniProt accession | Description |
|---|---|
| Q96DM1 | PiggyBac transposable element-derived protein 4 OS=Homo sapiens OX=9606 GN=PGBD4 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000046 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13842 all species → | Tnp_zf-ribbon_2 | DDE_Tnp_1-like zinc-ribbon | Domain | Interproscan |
| PF13843 all species → | DDE_Tnp_1_7 | Transposase IS4 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032718 all species → | Domain | PiggyBac transposable element-derived protein 4, C-terminal zinc-ribbon | Interproscan |
| IPR029526 all species → | Domain | PiggyBac transposable element-derived protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46599 all species → | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 | Interproscan |
CAB4030581.1. This gene does have a gene model — the search simply returned no hit.CAB4030581.1.Transcript abundance of CAB4030581.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
