Genomic Location: not available for this species
NR annotation: CAB4030647.1, O-mannosyl-transferase 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4030647.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8R2R1 | Protein O-mannosyl-transferase 1 OS=Mus musculus OX=10090 GN=Pomt1 PE=1 SV=1 |
| Q99PR0 | Protein O-mannosyl-transferase 1 OS=Rattus norvegicus OX=10116 GN=Pomt1 PE=2 SV=1 |
| F1QF89 | Protein O-mannosyl-transferase 1 OS=Danio rerio OX=7955 GN=pomt1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001322 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02366 all species → | PMT | Dolichyl-phosphate-mannose-protein mannosyltransferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003342 all species → | Domain | Glycosyl transferase family 39/83 | Interproscan |
| IPR016093 all species → | Domain | MIR motif | Interproscan |
| IPR027005 all species → | Family | Glycosyltransferase 39-like | Interproscan |
| IPR036300 all species → | Homologous_superfamily | Mir domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10050 all species → | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000030 all species → | Molecular Function | mannosyltransferase activity | Interproscan |
| GO:0006493 all species → | Biological Process | protein O-linked glycosylation | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004169 all species → | Molecular Function | dolichyl-phosphate-mannose-protein mannosyltransferase activity | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0035269 all species → | Biological Process | protein O-linked mannosylation | Interproscan |
CAB4030647.1.Transcript abundance of CAB4030647.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
