Genomic Location: not available for this species
NR annotation: CAB4030742.1, F-box only 4-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4030742.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9UKT5 | F-box only protein 4 OS=Homo sapiens OX=9606 GN=FBXO4 PE=1 SV=2 |
| Q3T0J1 | F-box only protein 4 OS=Bos taurus OX=9913 GN=FBXO4 PE=2 SV=1 |
| Q8CHQ0 | F-box only protein 4 OS=Mus musculus OX=10090 GN=Fbxo4 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006873 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036047 all species → | Homologous_superfamily | F-box-like domain superfamily | Interproscan |
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR039588 all species → | Family | F-box only protein 4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16008 all species → | F-BOX ONLY PROTEIN 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000209 all species → | Biological Process | protein polyubiquitination | Interproscan |
| GO:0019005 all species → | Cellular Component | SCF ubiquitin ligase complex | Interproscan |
| GO:0031146 all species → | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
CAB4030742.1.Transcript abundance of CAB4030742.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
