Gene detail

Detailed information of CAB4031098.1 in Paramuricea clavata

Genomic Location: :...
NR annotation: CAB4031098.1, collagen alpha-6(VI) chain-like, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A6H584	Collagen alpha-5(VI) chain OS=Mus musculus OX=10090 GN=Col6a5 PE=1 SV=4
Q21540	Cuticlin-6 OS=Caenorhabditis elegans OX=6239 GN=cut-6 PE=1 SV=2
P15989	Collagen alpha-3(VI) chain OS=Gallus gallus OX=9031 GN=COL6A3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00007	Cys_knot	Cystine-knot domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR006207	Domain	Cystine knot, C-terminal	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR006208	Domain	Glycoprotein hormone subunit beta	Interproscan
IPR024731	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan