Genomic Location: not available for this species
NR annotation: CAB4031701.1, transport Sec24C, partial, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4031701.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P53992 | Protein transport protein Sec24C OS=Homo sapiens OX=9606 GN=SEC24C PE=1 SV=3 |
| O94855 | Protein transport protein Sec24D OS=Homo sapiens OX=9606 GN=SEC24D PE=1 SV=2 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003759 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08033 all species → | Sec23_BS | Sec23/Sec24 beta-sandwich domain | Domain | Interproscan |
| PF04811 all species → | Sec23_trunk | Sec23/Sec24 trunk domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041742 all species → | Domain | Sec24-like, trunk domain | Interproscan |
| IPR050550 all species → | Family | SEC23/SEC24 family, SEC24 subfamily | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR012990 all species → | Domain | Sec23/Sec24 beta-sandwich | Interproscan |
| IPR006896 all species → | Domain | Sec23/Sec24, trunk domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13803 all species → | SEC24-RELATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0030127 all species → | Cellular Component | COPII vesicle coat | Interproscan |
| GO:0000149 all species → | Molecular Function | SNARE binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0070971 all species → | Cellular Component | endoplasmic reticulum exit site | Interproscan |
| GO:0090110 all species → | Biological Process | COPII-coated vesicle cargo loading | Interproscan |
CAB4031701.1.Transcript abundance of CAB4031701.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 13.88 | 46.21 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 5.31 | 16.26 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 4.45 | 14.20 | |
| apical branchlet · Control at T0 | 4 | 1 | 2.33 | 9.30 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
