Genomic Location: not available for this species
NR annotation: CAB4032029.1, histidine ammonia-lyase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4032029.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7YWP4 | Histidine ammonia-lyase OS=Bos taurus OX=9913 GN=HAL PE=2 SV=1 |
| P35492 | Histidine ammonia-lyase OS=Mus musculus OX=10090 GN=Hal PE=1 SV=1 |
| P21213 | Histidine ammonia-lyase OS=Rattus norvegicus OX=10116 GN=Hal PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002235 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00221 all species → | Lyase_aromatic | Aromatic amino acid lyase | Family | Interproscan |
| PF12053 all species → | Par3_HAL_N_term | N-terminal of Par3 and HAL proteins | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001106 all species → | Family | Aromatic amino acid lyase | Interproscan |
| IPR008948 all species → | Homologous_superfamily | L-Aspartase-like | Interproscan |
| IPR022313 all species → | Active_site | Phenylalanine/histidine ammonia-lyases, active site | Interproscan |
| IPR024083 all species → | Homologous_superfamily | Fumarase/histidase, N-terminal | Interproscan |
| IPR021922 all species → | Domain | Par3/HAL, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10362 all species → | HISTIDINE AMMONIA-LYASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004397 all species → | Molecular Function | histidine ammonia-lyase activity | Interproscan |
| GO:0006548 all species → | Biological Process | L-histidine catabolic process | Interproscan |
| GO:0016841 all species → | Molecular Function | ammonia-lyase activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
CAB4032029.1.Transcript abundance of CAB4032029.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
