Genomic Location: pcla8_s019969:6648...7722
NR annotation: CAB4032380.1, V-type proton ATPase subunit d 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| CDS |
| PACLA_8A049842 |
| Transcript |
| rna-PACLA_8A049842 |
| Protein |
| CAB4032380.1 |
| UniProt accession | Description |
|---|---|
| Q9W4P5 | V-type proton ATPase subunit d 1 OS=Drosophila melanogaster OX=7227 GN=VhaAC39-1 PE=2 SV=1 |
| Q6PGV1 | V-type proton ATPase subunit d 1 OS=Danio rerio OX=7955 GN=atp6v0d1 PE=1 SV=1 |
| P61420 | V-type proton ATPase subunit d 1 OS=Bos taurus OX=9913 GN=ATP6V0D1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007143 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01992 all species → | vATP-synt_AC39 | ATP synthase (C/AC39) subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016727 all species → | Family | ATPase, V0 complex, subunit d | Interproscan |
| IPR002843 all species → | Family | ATPase, V0 complex, c/d subunit | Interproscan |
| IPR036079 all species → | Homologous_superfamily | V-type ATP synthase subunit c/d subunit superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11028 all species → | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005765 all species → | Cellular Component | lysosomal membrane | Interproscan |
| GO:0005769 all species → | Cellular Component | early endosome | Interproscan |
| GO:0007034 all species → | Biological Process | vacuolar transport | Interproscan |
| GO:0007035 all species → | Biological Process | vacuolar acidification | Interproscan |
| GO:0016471 all species → | Cellular Component | vacuolar proton-transporting V-type ATPase complex | Interproscan |
| GO:0033179 all species → | Cellular Component | proton-transporting V-type ATPase, V0 domain | Interproscan |
| GO:0033181 all species → | Cellular Component | plasma membrane proton-transporting V-type ATPase complex | Interproscan |
| GO:0046961 all species → | Molecular Function | proton-transporting ATPase activity, rotational mechanism | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
CAB4032380.1.Transcript abundance of CAB4032380.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
