Gene detail

Detailed information of CAB4032819.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4032819.1, peptide-methionine (R)-S-oxide reductase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4032819.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1VNB7	Peptide methionine sulfoxide reductase MsrB OS=Polaromonas naphthalenivorans (strain CJ2) OX=365044 GN=msrB PE=3 SV=1
Q12AE4	Peptide methionine sulfoxide reductase MsrB OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) OX=296591 GN=msrB PE=3 SV=1
O26807	Peptide methionine sulfoxide reductase MsrB OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=msrB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01641 all species →	SelR	SelR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002579 all species →	Domain	Peptide methionine sulphoxide reductase MrsB domain	Interproscan
IPR028427 all species →	Family	Peptide methionine sulfoxide reductase MsrB	Interproscan
IPR011057 all species →	Homologous_superfamily	Mss4-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10173 all species →	METHIONINE SULFOXIDE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0033743 all species →	Molecular Function	peptide-methionine (R)-S-oxide reductase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0016671 all species →	Molecular Function	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	Interproscan
GO:0030091 all species →	Biological Process	protein repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07305	msrB; peptide-methionine (R)-S-oxide reductase	EC:1.8.4.12	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4032819.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

12TPM > 0

4Conditions

95.5Max TPM

29.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	49.27	85.72
apical branchlet · Temperature treatment at T0	6	4	34.69	95.51
apical branchlet · Temperature treatment at T25	5	1	5.51	27.57
apical branchlet · Control at T0	4	2	23.06	76.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	85.72
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	64.92
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	58.32
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	56.93
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	29.75
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	95.51
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	74.04
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	26.14
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.42
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	27.57
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	76.19
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	16.03
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.