Genomic Location: not available for this species
NR annotation: CAB4033510.1, family sugar-phosphate isomerase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4033510.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q47334 | Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli OX=562 GN=kpsF PE=3 SV=1 |
| Q8FDQ2 | Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=kpsF PE=1 SV=2 |
| P42502 | Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli OX=562 GN=kpsF PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010226 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01380 all species → | SIS | SIS domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046348 all species → | Homologous_superfamily | SIS domain superfamily | Interproscan |
| IPR001347 all species → | Domain | SIS domain | Interproscan |
| IPR050986 all species → | Family | SIS family GutQ/KpsF subfamily isomerases | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42745 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0097367 all species → | Molecular Function | carbohydrate derivative binding | Interproscan |
| GO:1901135 all species → | Biological Process | carbohydrate derivative metabolic process | Interproscan |
CAB4033510.1.Transcript abundance of CAB4033510.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 175.04 | 247.52 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 183.72 | 385.73 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 121.36 | 306.23 | |
| apical branchlet · Control at T0 | 4 | 3 | 199.44 | 475.63 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
