Genomic Location: not available for this species
NR annotation: CAB4033988.1, aspartate--tRNA ligase, cytoplasmic [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4033988.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3SYZ4 | Aspartate--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=DARS1 PE=2 SV=1 |
| P15178 | Aspartate--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dars1 PE=1 SV=1 |
| P14868 | Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=DARS1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005889 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00152 all species → | tRNA-synt_2 | tRNA synthetases class II (D, K and N) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR002312 all species → | Family | Aspartyl/Asparaginyl-tRNA synthetase, class IIb | Interproscan |
| IPR006195 all species → | Domain | Aminoacyl-tRNA synthetase, class II | Interproscan |
| IPR004523 all species → | Family | Aspartate-tRNA synthetase, type 2 | Interproscan |
| IPR004364 all species → | Domain | Aminoacyl-tRNA synthetase, class II (D/K/N) | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43450 all species → | ASPARTYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004815 all species → | Molecular Function | aspartate-tRNA ligase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006422 all species → | Biological Process | aspartyl-tRNA aminoacylation | Interproscan |
| GO:0017101 all species → | Cellular Component | aminoacyl-tRNA synthetase multienzyme complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22503 | DARS1; aspartyl-tRNA synthetase | EC:6.1.1.12 | Transfer RNA biogenesis | ko03016 | deepkoala |
Transcript abundance of CAB4033988.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 306.03 | 478.86 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 201.25 | 320.87 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 122.96 | 307.54 | |
| apical branchlet · Control at T0 | 4 | 4 | 123.02 | 210.50 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
