Genomic Location: not available for this species
NR annotation: CAB4034195.1, coiled-coil alpha-helical rod 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4034195.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8HZ58 | Coiled-coil alpha-helical rod protein 1 OS=Pongo pygmaeus OX=9600 GN=CCHCR1 PE=3 SV=1 |
| Q8TD31 | Coiled-coil alpha-helical rod protein 1 OS=Homo sapiens OX=9606 GN=CCHCR1 PE=1 SV=2 |
| Q8HZ57 | Coiled-coil alpha-helical rod protein 1 OS=Pan paniscus OX=9597 GN=CCHCR1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007244 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07111 all species → | HCR | Alpha helical coiled-coil rod protein (HCR) | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009800 all species → | Family | Coiled-coil alpha-helical rod protein 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46822 all species → | COILED-COIL ALPHA-HELICAL ROD PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0030154 all species → | Biological Process | cell differentiation | Interproscan |
| GO:0005814 all species → | Cellular Component | centriole | Interproscan |
| GO:0006611 all species → | Biological Process | protein export from nucleus | Interproscan |
CAB4034195.1.Transcript abundance of CAB4034195.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 6.22 | 20.10 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 4.81 | 25.24 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.23 | 1.13 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.25 | 1.02 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
