Gene detail

Detailed information of CAB4034656.1 in Paramuricea clavata

Genomic Location: pcla8_s022485:3847...7186
NR annotation: CAB4034656.1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A078487

CACGGGCGACTATTTGTCTCAGCCGCTGAGCAAAAATAACGACGTTTCATTTTGGTCGCCATTTTGGATTTCTAAAAATTTTTCTTTGCTGATATTTGACAACCTCGTCCGATATTTGATTGTTTTTACGTGTTATATGTGCTTTAAATCACTGTTTTGAACACAATGAGCAAGCAGGTTGAAAACGTAGCCGATGAAGAACTGAACGTGGAAGAATTGGCTGTAACTTCAGCAGTTCTCATGGCCGGAGCACACCATCTTGGCAAGCAGTGCGAGCAAGATTTTAAAAAGTTCATGGCATGTCGATATGACACGCGAGACCCGAGAAAATGCTTGGAGGAAGGACGAAAAGTGACTAGCTGTGCGCTACAATTTTTTAAGACTGTGAAAGCGAACTGTAATGACGAATTCGCCAAATACTGGACATGTTTGGATCATAACAATCAAGAATTTGGTCACTGTAGAAAACCTCAAGGATTCTATGATTCCTGCCTGTTGGATAAACTGGGATGGAAGACTGAGCAGCCAGTACACTTAAAGTTGTAAAAGTATTATGAAACAATGGCTAGAACTTTATTAACTGCCTCGATATGTTGACTTTATTCCATAATTTACAATGTGACTTCGTTGCTTCGTGTTGGTGGTCTTTGAATATTATGAAATTATATGATATCAgttggtatatatattttaccCTGTCACTATTTGACTTGCAGCTGGTCACATTTCAAGGTGTACTAAATGATGCATTTGTagtttactgtcgttccaattgaagtgttcctcaaatattgattcaatacattacctcaggctgaccaattcatttcatcaagttcgtcgagatattcatacacttcctgtgaaagagccaattccaagaatttgttccaacaaaggtgattggtgcattccaACTATTCAataggaagtttacaattatactaggaagtgtatgaatatttcgaggaacttgatcaaatgaattggtcagcccgaggtaatgtactgaatcaatatttgaggaacacttcaattggaacgacagtaataaagaggctgtcaagtccgttctgctcatgaGCATGTTTTGTTCACATTTCTTGTTTCAAACAATAgacaatttaattaaaattttattaattttaattaaattatctattataatagtttttgtttgtggaaacaccacgtaaatttattactgcaaagctttcgatctgtaagcccggatcttcatcagtgctaataatatgtgacttgtttaattcacatgCCCTTTTTAAATTagattaaacaagtcacatattattagctctgatgaagatccgggcttacagatcgaaagctttgcagtaataaatttacgtggtgtttccacaaacaaaaactattatatgttttatcgccatgcaaacctacaaagaacttaaattatctattgtttgacccacagatcggaattttaattaaattatctattgtttgaaacaaaaaatgtaaacaaaacatgtGCATTTCATGAGCAGAACGGGCTTGATAAAGATAAACTGTAAAAGTCAAATTCTAAAAGAAATAAGCTGATCCCAACCCCAGCCCTATCCCCTAGAGGTCGAAGAGAGGAAACTAGTCAGGAGTAAAAGTTAACCCAtgaagttgcattgtgccctaatgctccctacttcattattttactctgtctaatgccagatgattttactcaccAAGGGGGTTAAACAAGTTTTAGGTGAAATCACTCAGGCAAATGGAAAATGTCCTGAAGCTGACTCGAACCCAGGAACTAGAATGCAGCAGATGCACGTCACTGTCTGAGGTGCTGCCAAGCTCATGCTGCTGCAGTGCTGCATGTTATAGTGACTGCCAGAGACATAACTGGCTACCAGACAAATAGGCACTACGTCACTTTTATATGCCTTCCCCCTCTGGGAAACTAGTCGGCTAATTTCGAGAACATGGGGCAAATTTTCAGCTGGTCCAGTtgtttacacagtacaactcaagttctAAGCaagttgcatgcgacagttttaggcaaaagttgtgcagTGTAAATCAGCCTATAAAAATTACCTACTCTGTACAACCTAATGTGATATGCCACACCTGTCACCCATTTTCCCAGTAAAATTGACATACTTCATCCAACCGCCCCACTTAGTATAGACTACCATTGAGTATAAATTTCCTGGATTCGAAAGAGATTTTTCAATAGGGCCTTTTGAAGTAGGAATATTTATCCCACACAGTAAAACGCGCAGACGATATTAGATTTGTTGggacaacttgttgcgagtctgttggcatAACAACgcgttccagacttgtcaacaacttggaacaagcagaGGCAGTGCGAACACGTCTTGTTGACAACAGGGGGCTTTCATTTTCATATTTTAGCGCTtttaatatgaaagaaaacaagagGTCAAACTTCACGAGAGAAATTCAAATGTTATTGTTGTATGGAATTTTACTATTATGTATGAAGTATGTATGCCTGCGCTTCTGCATGTAGTATTAACAGTTTAAATGCAGTTTCTTATTTCGTTTTAGCAGTTTCAATTCCATATTTCATACAATTCTGGAGTTGTAGACGTTTGTTGCCTTGTTTGTTGTTTTCGTTTTGCTATGCAtcctacaacaaaacaaaagtTTCCTTTTCCGATTGGCCCTAGCAATTTTTACGGTAAATATTTCAGCAAAATGACCATACGTCTTCTGAAAAACATTACTTTAACTTTTATATGCTTAGTTTTTATCGATAATTATTGGAAAACACGTTGATTTTGACTGGCCACCTTATTTTATAACCCGAACTCTTCCAAGCTTGGTGGGAATAAAGGATCACttcatttagccaatcagattgcgagCTTTTTTGGATCgcgatctgattggttaaaatgaagGCAGACCAGAAAGTAGACAGGTACCTACAAAATGGTGAAATAGCTGGTATCGTAGAGCACTAGCAGGCTACtgaccaacctcgtacccaggctcttaccttcgccctgggtacgaggttggctacTGACGCtacggcaattgctagatagtatacttcaaaataaggtttgtTGAGATAAGTACTTTTAGTGTTTAGAgtttaaactatatttatatggTTGATATTATTTAGCATAAATTAACATAACGTACCGTAatacagttaatatatacagtacatcggACACGTGACTATGCGTTCGttgcagtgcttccattttcaaggaaatttccttttctaaagaaattctagtgtcgaaaaggaaaatctaaggaagagaaaaaatctaaggaaatctaaggattt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DCJ5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Mus musculus OX=10090 GN=Ndufa8 PE=1 SV=3
Q0MQB0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA8 PE=2 SV=3
P51970	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Homo sapiens OX=9606 GN=NDUFA8 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009831 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for CAB4034656.1 in Paramuricea clavata.

InterPro

InterPro term	Type	Description	Source
IPR016680 all species →	Family	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13344 all species →	NADH-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03952	NDUFA8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4034656.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

18TPM > 0

4Conditions

30.2Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	5.19	9.61
apical branchlet · Temperature treatment at T0	6	4	5.57	21.40
apical branchlet · Temperature treatment at T25	5	5	12.22	30.21
apical branchlet · Control at T0	4	4	7.06	12.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	9.61
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.81
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	5.39
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.99
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.34
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	21.40
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	7.85
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.83
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.37
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	30.21
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	16.96
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	7.44
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.95
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	2.52
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	12.17
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	10.78
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	3.20
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	2.10

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.