Genomic Location: pcla8_s022802:1130...1912
NR annotation: CAB4034925.1, DUF3413 domain-containing, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| CDS |
| PACLA_8A015355 |
| Transcript |
| rna-PACLA_8A015355 |
| Protein |
| CAB4034925.1 |
| UniProt accession | Description |
|---|---|
| P44898 | Uncharacterized protein HI_0841 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0841 PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008397 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00884 all species → | Sulfatase | Sulfatase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017850 all species → | Homologous_superfamily | Alkaline-phosphatase-like, core domain superfamily | Interproscan |
| IPR052701 all species → | Family | Glycosaminoglycan & Ulvan Degrading Sulfatases | Interproscan |
| IPR000917 all species → | Domain | Sulfatase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43751 all species → | SULFATASE | Interproscan |
CAB4034925.1. This gene does have a gene model — the search simply returned no hit.CAB4034925.1.Transcript abundance of CAB4034925.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
