Genomic Location: not available for this species
NR annotation: CAB4034938.1, cysteine-rich with EGF-like domain 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4034938.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A0A6I8RMG7 | Protein disulfide isomerase CRELD1 OS=Xenopus tropicalis OX=8364 GN=creld1 PE=3 SV=1 |
| Q5XH36 | Cysteine-rich with EGF-like domain protein 2-A OS=Xenopus laevis OX=8355 GN=creld2-a PE=2 SV=1 |
| Q4V7M2 | Cysteine-rich with EGF-like domain protein 2-B OS=Xenopus laevis OX=8355 GN=creld2-b PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003229 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11938 all species → | DUF3456 | TLR4 regulator and MIR-interacting MSAP | Family | Interproscan |
| PF00053 all species → | Laminin_EGF | Laminin EGF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021852 all species → | Domain | Domain of unknown function DUF3456 | Interproscan |
| IPR051146 all species → | Family | Phosphatidylserine Receptors and Protein Disulfide Isomerases | Interproscan |
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24038 all species → | STABILIN | Interproscan |
CAB4034938.1. This gene does have a gene model — the search simply returned no hit.CAB4034938.1.Transcript abundance of CAB4034938.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
