Gene detail

Detailed information of CAB4035188.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4035188.1, V-type proton ATPase 16 kDa proteolipid subunit, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4035188.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03105	V-type proton ATPase 16 kDa proteolipid subunit c OS=Torpedo marmorata OX=7788 PE=1 SV=1
P63082	V-type proton ATPase 16 kDa proteolipid subunit c OS=Mus musculus OX=10090 GN=Atp6v0c PE=1 SV=1
P63081	V-type proton ATPase 16 kDa proteolipid subunit c OS=Rattus norvegicus OX=10116 GN=Atp6v0c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00137 all species →	ATP-synt_C	ATP synthase subunit C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002379 all species →	Domain	V-ATPase proteolipid subunit C-like domain	Interproscan
IPR035921 all species →	Homologous_superfamily	F/V-ATP synthase subunit C superfamily	Interproscan
IPR011555 all species →	Family	V-ATPase proteolipid subunit C, eukaryotic	Interproscan
IPR000245 all species →	Family	V-ATPase proteolipid subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10263 all species →	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0033177 all species →	Cellular Component	proton-transporting two-sector ATPase complex, proton-transporting domain	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4035188.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4035188.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

19TPM > 0

4Conditions

428.4Max TPM

186.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	202.46	358.32
apical branchlet · Temperature treatment at T0	6	4	136.39	378.42
apical branchlet · Temperature treatment at T25	5	5	217.48	428.37
apical branchlet · Control at T0	4	4	199.58	342.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	358.32
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	270.26
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	267.26
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	134.08
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	95.49
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	89.33
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	378.42
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	245.70
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	116.50
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	77.71
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	428.37
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	398.04
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	176.17
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	50.93
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	33.92
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	342.25
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	183.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	143.31
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	129.75

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.