Genomic Location: not available for this species
NR annotation: CAB4035419.1, lysyl oxidase homolog 2A-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4035419.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A1L1V4 | Lysyl oxidase homolog 2B OS=Danio rerio OX=7955 GN=loxl2b PE=2 SV=1 |
| Q5RFQ6 | Lysyl oxidase homolog 2 OS=Pongo abelii OX=9601 GN=LOXL2 PE=2 SV=1 |
| P58022 | Lysyl oxidase homolog 2 OS=Mus musculus OX=10090 GN=Loxl2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001610 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00530 all species → | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| PF01186 all species → | Lysyl_oxidase | Lysyl oxidase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036772 all species → | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR001190 all species → | Domain | SRCR domain | Interproscan |
| IPR050912 all species → | Family | Lysyl oxidase-like protein | Interproscan |
| IPR001695 all species → | Family | Lysyl oxidase | Interproscan |
| IPR017448 all species → | Domain | SRCR-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45817 all species → | LYSYL OXIDASE-LIKE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004720 all species → | Molecular Function | protein-lysine 6-oxidase activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0018057 all species → | Biological Process | peptidyl-lysine oxidation | Interproscan |
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
| GO:0016641 all species → | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00280 | LOXL2_3_4; lysyl oxidase-like protein 2/3/4 | EC:1.4.3.- | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of CAB4035419.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 7.34 | 16.36 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 21.55 | 45.06 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 16.44 | 39.29 | |
| apical branchlet · Control at T0 | 4 | 3 | 23.65 | 41.80 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
