Genomic Location: not available for this species
NR annotation: CAB4035521.1, UDP-glucuronic acid decarboxylase 1-like, partial, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4035521.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5PQX0 | UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus OX=10116 GN=Uxs1 PE=1 SV=1 |
| Q91XL3 | UDP-glucuronic acid decarboxylase 1 OS=Mus musculus OX=10090 GN=Uxs1 PE=1 SV=1 |
| Q6DF08 | UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis OX=8364 GN=uxs1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003385 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01370 all species → | Epimerase | NAD dependent epimerase/dehydratase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044516 all species → | Family | UDP-glucuronic acid decarboxylase | Interproscan |
| IPR001509 all species → | Domain | NAD-dependent epimerase/dehydratase | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43078 all species → | UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0042732 all species → | Biological Process | D-xylose metabolic process | Interproscan |
| GO:0048040 all species → | Molecular Function | UDP-glucuronate decarboxylase activity | Interproscan |
| GO:0070403 all species → | Molecular Function | NAD+ binding | Interproscan |
CAB4035521.1.Transcript abundance of CAB4035521.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
