Genomic Location: not available for this species
NR annotation: CAB4035551.1, myeloid differentiation primary response 88-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4035551.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001787 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13676 all species → | TIR_2 | TIR domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000157 all species → | Domain | Toll/interleukin-1 receptor homology (TIR) domain | Interproscan |
| IPR035897 all species → | Homologous_superfamily | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Interproscan |
| IPR017281 all species → | Family | Myeloid differentiation primary response protein MyD88 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15079 all species → | MYD88 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0002755 all species → | Biological Process | MyD88-dependent toll-like receptor signaling pathway | Interproscan |
| GO:0043123 all species → | Biological Process | positive regulation of canonical NF-kappaB signal transduction | Interproscan |
| GO:0070976 all species → | Molecular Function | TIR domain binding | Interproscan |
CAB4035551.1.Transcript abundance of CAB4035551.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
