Gene detail

Detailed information of CAB4036792.1 in Paramuricea clavata

Genomic Location: pcla8_s025292:3451...6197
NR annotation: CAB4036792.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A069412

CTGAGAGATTGGTTTGGTTGAGAGTGGCGGCTAAATAAACTCCAGGGGTCCAGGATCATgttcccccagaaaattttggaacaAAATGAGACCTCGGTCTAACTACCAGCAACAACTGTTTCAAGCCACATAACCGGCGATTgtgaatatttaatatgtcATAAACTTTTTCTTTGGAGTGGCTTATccccttttttttacttttttaaagACTAGATAACCCCTGGCcccctaaccccccccccccacccctcctGGTTCCACCGGCCATGTTAATCATAATATCACATATGTGATGTAAATGCAGTTTTAGTGGGCACCAGTGGTGGACACACAGTAATTCCAACCTAGCTTCCCCATTGAGCTCCCCTCCACGCACAAGGCCCGCAAAAGAAAAGGCAGCAGACCTCGTCCCTGATTTTACCGGGGGGGAGAAGCACGACTGTCGATGTGTACATTCCTCAATGCCAAATATCATATATCCTGTGGTCAAGACGACAGTGTCAACACAGCAAGCGATCATAGATCGTGAGAAAAGTTTATACTTCTACACTAACTGGCTGCCATGCCTAACTCAGATAATACTGCTCCAATTCAGACGTTCATTTATCCAGTTGGCGACAGCTACACAGGCACATGGGACGACGAGGGCAGAAAACATGGTGTTGGGAAACTAAATTTGACTAATGGCTCGTTCTATGTAGGACAATTTCAACACGGTTTATGCTCTGGTTATGGCGTATTAAAACTACCTGATGGAGCTCGATATGAAGGCGAGTTTATCTACGGTAAATTTCACGGAGTTGGTGTCTACACTCGTACAGATGGAATGAAATTTGAGGGTGAATTTTTCGAAGGAGACGTACGTGGTTTGGGTTTGCTGACTTTTCCTGATGGTACTCATGGTATTCCAAGAAATGAAGGTAGATTTGAAGGAACTAAATTCTTGGGACATGCAAAAGCTGAAACAATCGTAACCAAAGCAAGGGAAGCTGCTGTTAAAGCTTATCAGTGTTCTGATCCTTGATAAAAAGAAATTAGGAACATGCATATTTTTCATAGCAAATCATATTtcgatatttgcatatttaattattaatatgaTTTTGTACATGTTATATTTTAATCAACCTATTAATGTAAATGGGGTGGGGGTTTGGCTTGAACACTAAATAATCTGGCTTGGCTGTCAGGAATTTGAACATCAATGTGATCccagagggtgggaaaggggggggggggtgtatggGTAACGTTTCAGAACGAAAAAAAGAAGCTGTTTTACAATTCAcatgtcttaaaaaagcaatttcacatttcactAAAAACTGGattctaataaaaataatataataataataggtttattaagagtATTTTAATGCAAAAATTGGTACAGCAGCCaggcagttaaaaactacattgcAATTTACAAGGTTGAGTGATGAGAACGTCCGACAACCTCCAAAATTCGAAAGACGgctccgaagtttttactcttgtgcaatcaaGTGAGGTCGATTATTATCGCCTATTATGTCTATTATGGCCTCGATTATGgctattataaaataaattgaaaaaaaaaaacaaagcaaaatcacagTTTACGAAACAGACacccttaattctcatttcacagAGCATTATTATCAACAATGGAATCACGCCTCAttgctgtagaacaaatcacatttcacgacactaaaatgaAACATTGCACACAAACAAATATCTTCTTTCCCACCCTCATTCCAGTCTTTGCCataccatttttattttgtgccacttaggggctgtttacatgagcccagCTGGCCCAGTTAACCAGGCTGAAACTTTACCAAGCCAAATATGGTGGGGgaaagttgtttacttgttaTAATACTGTAAGGTTTGTCACGCAAGTTAAATGCACATTTTATAGAGCTATTTTTCGATTTAAAACTATCTAATCGACAAGAACAACTTaagaaataaatattataactaTTTAAATTGTCCAAAAAAATACTAATTCAAATTGATATTGTAGTTTGTACAGATGTTTTTTTGCCAGACGATTACCCAGGCTGATGACTTTACATGGGAGTCCCTTTTCCAAGTCCAAGCGAGATCTCGGCTAGGCGGGCTGGCCTGGTTTACATGTAAActaaaattgttttcttaaGGGATTTGTACTAAGCCAGGCGCCTCAGTTAACCAGGCCAGCCAGGCTCACGTAAACATGCAGCCCCTTAgtgctttttaaaatttttttttattgttttaaatttttttcactaTTCGAACATGGTTTTGCAAAACCATATTGAAACTGTAATGGCATTGAGTTGCTTAACCCAATCAGAGCCAGCAAACTCCCCTCTGGCTAATTAGAcaaattaagttgcattgcaccccaaTGTGCCCtagctactttattattttactctgtctaaacaccagatgatttttcTCCTCAGGGGCATGGGTTAATTTATTCAGAAATAATGGCACtccatatcatatttaaaaataggtacgctaagcgtacatgtatctgctcatattaatactcagtagcttgtaaaaataaactagaaatacttgcatgcaataacccctcgcttatattctccaaacattgtttcaacatgaagtatattCGTGATTACGCCAACATTGAACGCAAGCTCGCGTTGCACGTCATgtttgtcatggcaacacgataattttaaaaaatttttttggtacaAACGTCAAAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008130 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR052315 all species →	Family	MORN repeat-containing protein 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46614 all species →	MORN REPEAT-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0048678 all species →	Biological Process	response to axon injury	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25701	MORN4; MORN repeat-containing protein 4	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4036792.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

13TPM > 0

4Conditions

14.4Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	6.30	11.08
apical branchlet · Temperature treatment at T0	6	4	6.45	14.36
apical branchlet · Temperature treatment at T25	5	1	0.35	1.75
apical branchlet · Control at T0	4	3	5.86	10.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	11.08
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	9.08
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.58
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	6.21
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.88
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	14.36
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.02
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	10.93
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.37
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1.75
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	10.87
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	7.60
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	4.96
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.