Genomic Location: not available for this species
NR annotation: CAB4038043.1, Peroxisomal sarcosine oxidase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4038043.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9D826 | Peroxisomal sarcosine oxidase OS=Mus musculus OX=10090 GN=Pipox PE=1 SV=1 |
| Q29RU9 | Peroxisomal sarcosine oxidase OS=Bos taurus OX=9913 GN=PIPOX PE=2 SV=2 |
| P23342 | Monomeric sarcosine oxidase OS=Bacillus sp. (strain NS-129) OX=1419 GN=soxA PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001714 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01266 all species → | DAO | FAD dependent oxidoreductase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006076 all species → | Domain | FAD dependent oxidoreductase | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR045170 all species → | Family | MTOX family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10961 all species → | PEROXISOMAL SARCOSINE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005777 all species → | Cellular Component | peroxisome | Interproscan |
| GO:0008115 all species → | Molecular Function | sarcosine oxidase activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0033514 all species → | Biological Process | L-lysine catabolic process to acetyl-CoA via L-pipecolate | Interproscan |
| GO:0050031 all species → | Molecular Function | L-pipecolate oxidase activity | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
CAB4038043.1.Transcript abundance of CAB4038043.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
