Genomic Location: pcla8_s027528:5293...6750
NR annotation: CAB4038275.1, E3 ubiquitin- ligase PDZRN3-like, partial [Paramuricea clavata]
| CDS | ||||
| PACLA_8A003237 | ||||
| Transcript |
| rna-PACLA_8A003237 |
| Protein |
| CAB4038275.1 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| E7FDW2 | E3 ubiquitin-protein ligase PDZRN3-B OS=Danio rerio OX=7955 GN=pdzrn3b PE=1 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|U-box |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01344 | Kelch_1 | Kelch motif | Repeat | Interproscan |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015915 | Homologous_superfamily | Kelch-type beta propeller | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR013010 | Domain | Zinc finger, SIAH-type | Interproscan |
| IPR001293 | Domain | Zinc finger, TRAF-type | Interproscan |
| IPR006652 | Repeat | Kelch repeat type 1 | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10131 | TNF RECEPTOR ASSOCIATED FACTOR | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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