Gene detail

Detailed information of CAB4038367.1 in Paramuricea clavata

Genomic Location: pcla8_s027690:4213...5805
NR annotation: CAB4038367.1, E3 ubiquitin- ligase PDZRN3 [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q6DJN2	TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1
Q28DL4	TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1
Q3MV19	TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564	U-box	U-box domain	Domain	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13854	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003613	Domain	U-box domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45632	LD33804P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan