Genomic Location: not available for this species
NR annotation: CAB4038460.1, SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4038460.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B2ZFP3 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio OX=7955 GN=smarcal1 PE=2 SV=1 |
| Q0P4U8 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis OX=8364 GN=smarcal1 PE=2 SV=1 |
| Q498E7 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis OX=8355 GN=smarcal1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001424 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00176 all species → | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| PF07443 all species → | HARP | HepA-related protein (HARP) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR000330 all species → | Domain | SNF2, N-terminal | Interproscan |
| IPR038718 all species → | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR010003 all species → | Domain | HARP domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45766 all species → | DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0031297 all species → | Biological Process | replication fork processing | Interproscan |
| GO:0048478 all species → | Biological Process | obsolete replication fork protection | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0140658 all species → | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
CAB4038460.1.Transcript abundance of CAB4038460.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 3 | 1.09 | 4.74 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.06 | 0.31 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
