Gene detail

Detailed information of CAB4038885.1 in Paramuricea clavata

Genomic Location: pcla8_s028580:3010...5202
NR annotation: CAB4038885.1, molecular chaperone [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A017332

GGAGATTTTAATCGGGTAGACTATGGGGAGTTGTAATCGTGGGttataaatttagttgaaaaatACTCTGAATTAACCGCCCCCACGCTCCTGTGACAATTTATTGGTGAGAGATTTCTAGTAAAGCGCATCGCAATACATTTTCCATGAAGAACCTCCAGTGATTGGGTTATGCAAGATAAACCCAGCCCGATCAAATCCGTGTCGTGAAACGGCGCAGGGTAGCGGAAACCATGTTGCAAACGATGGAGAGAGGGTTTGATGAATTCATGCACGTTTGAATCGGTTTGACGTTTCTGTGTACTTTATGAGAACTTTGGAAACTATGCACAAAAGCGAGATTTGGTCGatagttaatcactattttgtttCAGCATTGTCCTCAGAGATATTCACTATGCCCCCCCGTGGATGCTATCCTTTATGAcgttcttacatgaagttttgTATGTGTGATTCTCttaaaaatttcgaaaacacaaAACACTGCAGGAAAGTGAAAATGTCAGCAAAAAAGGACTATTATAAAATTCTTGATATATCTCGCGAGGCATCGCAGAGTGATATAAAACGAGCTTACCGTAAACTAGCTCTTAAATATCATCCAGATAAAAACAAAAGCCCAGATGCGACGAAGAAATTTCAAGATATAGGTGAAGCGTACTCGGTTCTTTCAGACAAGGCAAAACGACGCAGATATGATTTGGGTAGCACAACACCGTTCTCAGGATTCAGCGACAATGAATTCAGCGATTTTGCCTCGGACTTTGCTACCACCTTTTCTGGAAGTTTCACAATGGACGACGCTTTTAATGTATTTTCAGATTTTATGTATGGTGGGGATATGCCTGTGTTTTTCCGGGAAGAAAACACGACATATCATAAAGTTGATGTGCCTTTATCTGTGGCACAACATGGGGGGAATATAGATCTTCCTTTTGAAAAAGCAGAGGGGGAGAACTCTCTTCATATTGATGGTATTTATAGTGGAAAATGGAAACCATTCATTGTTGTCGGAGAAAGTGATACTGTTATTTTAAAAGTTGTGTTCCCCCCTGATATGAGTTTGGAAGAAAGACATCGACAGCAGAAAATGTTTCTAGGAATTCATGCTATATCATGGGTGGCAAATACAGTTCAAGATGTCTTGGAAAGTCATCCAGTAATGGGAGCAATTGGCTTGGGGTTTGGTGCCGCTGCACTGTTTATGTTAACAGTTAAAAGGTTAACTGATCATGAGTGACTATAAAAATTGTATATACACACAGATCCTATAATACATGTATTTGTATAATTAAACACATCAAACAAGCTTCATCTAGAAATAGTCGTATCTGATCTGTTTATGTGTTTTCAACATTAGATGAACTATtataaacctctgaatataccCCCTGCCTGTGTTAAGCCAACCATATTTCACTAATTCTCAAGCCATTCAGAatattagcccccccccccctccaactgtataagcccatgggcttattATTGGACAGGTATTTATTAACACAGCAACAGGGATTCCAACTGTAGCTCAGACCAACTTcttttatgtttatatttctttttgttCATGATATACAGTAGTTACcacaataaatattaattactAACATACAGTACAATAAATAATAGCGAGCAAGCGGCATTTTTGTCAACACAGACGTCACCcaaaaattggtataactaattttgatggcattttgcatcatagcgctcatgtaagaaagaaaaaaaactttaaaaatcttatgttttgtcatatgtgttgaagattaccacaaactgatataGGGGAAGTTTTTAGTCCAGTCCCCCCTCGACAATCTGACAtctgtgttgacaaaaacgttgcTTGCTTTAATTAAGCTCCCTGTTATTAGTAACACCAAATGTTGTCCATATCTAAGCCCAAAAAATGCTTATGAacaaatataagcccagggcttatattaAAAACCCATTATTGGAATTTTTCCCCTCACCCTGTGATATTTGCTATATGAGCATGTATGAACCAGCTGTAAATTAATTATGAAATTGTTGTAGTGTGTACTGTACaacattaaaataatttgtaTGTATTAAATCAATTTTACAGACAAGTAATATATTCAATTGTTCTTATACTTTGTATGACTGTATAATGTGTAGATTAAATTTACATTAATTGTGTAATTGATAATCGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56237	Chaperone protein DnaJ 2 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=dnaJ2 PE=1 SV=2
Q7NBW0	Chaperone protein DnaJ OS=Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2)) OX=710127 GN=dnaJ PE=3 SV=2
Q03FR6	Chaperone protein DnaJ OS=Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w) OX=278197 GN=dnaJ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0018222 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR051948 all species →	Family	Hsp70 co-chaperone J-domain-containing protein	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44360 all species →	DNAJ HOMOLOG SUBFAMILY B MEMBER 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4038885.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4038885.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

16TPM > 0

4Conditions

28.1Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	6.93	13.29
apical branchlet · Temperature treatment at T0	6	4	4.50	14.87
apical branchlet · Temperature treatment at T25	5	4	10.53	28.12
apical branchlet · Control at T0	4	3	6.94	9.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	13.29
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.84
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.39
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	6.85
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	5.18
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	14.87
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	6.23
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.34
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.56
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	28.12
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	16.93
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	4.27
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.31
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	9.44
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	9.27
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	9.04
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.