Genomic Location: not available for this species
NR annotation: CAB4038990.1, nuclear pore complex Nup205-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4038990.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q92621 | Nuclear pore complex protein Nup205 OS=Homo sapiens OX=9606 GN=NUP205 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003440 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11894 all species → | Nup192 | Nuclear pore complex scaffold, nucleoporins 186/192/205 | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021827 all species → | Family | Nucleoporin Nup186/Nup192/Nup205 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31344 all species → | NUCLEAR PORE COMPLEX PROTEIN NUP205 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005643 all species → | Cellular Component | nuclear pore | Interproscan |
| GO:0006999 all species → | Biological Process | nuclear pore organization | Interproscan |
| GO:0017056 all species → | Molecular Function | structural constituent of nuclear pore | Interproscan |
| GO:0044611 all species → | Cellular Component | nuclear pore inner ring | Interproscan |
CAB4038990.1.Transcript abundance of CAB4038990.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
