Genomic Location: not available for this species
NR annotation: CAB4039413.1, ELL-associated factor 1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4039413.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5ZHP7 | ELL-associated factor 2 OS=Gallus gallus OX=9031 GN=EAF2 PE=2 SV=1 |
| Q96JC9 | ELL-associated factor 1 OS=Homo sapiens OX=9606 GN=EAF1 PE=1 SV=1 |
| Q9D4C5 | ELL-associated factor 1 OS=Mus musculus OX=10090 GN=Eaf1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008385 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09816 all species → | EAF | RNA polymerase II transcription elongation factor | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019194 all species → | Domain | Transcription elongation factor Eaf, N-terminal | Interproscan |
| IPR027093 all species → | Family | EAF family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15970 all species → | ELL-ASSOCIATED FACTOR EAF | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003711 all species → | Molecular Function | transcription elongation factor activity | Interproscan |
| GO:0006368 all species → | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0008023 all species → | Cellular Component | transcription elongation factor complex | Interproscan |
| GO:0032783 all species → | Cellular Component | super elongation complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15186 | EAF; ELL-associated factor | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of CAB4039413.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
