Genomic Location: not available for this species
NR annotation: CAB4039449.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4039449.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P07942 | Laminin subunit beta-1 OS=Homo sapiens OX=9606 GN=LAMB1 PE=1 SV=2 |
| P02469 | Laminin subunit beta-1 OS=Mus musculus OX=10090 GN=Lamb1 PE=1 SV=3 |
| P55268 | Laminin subunit beta-2 OS=Homo sapiens OX=9606 GN=LAMB2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003322 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00053 all species → | Laminin_EGF | Laminin EGF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR050440 all species → | Family | Laminin/Netrin Extracellular Matrix | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10574 all species → | NETRIN/LAMININ-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009887 all species → | Biological Process | animal organ morphogenesis | Interproscan |
| GO:0009888 all species → | Biological Process | tissue development | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0034446 all species → | Biological Process | substrate adhesion-dependent cell spreading | Interproscan |
| GO:0043256 all species → | Cellular Component | laminin complex | Interproscan |
| GO:0070831 all species → | Biological Process | basement membrane assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05636 | LAMB1; laminin, beta 1 | - | Toxoplasmosis | ko05145 | deepkoala |
Transcript abundance of CAB4039449.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
