Gene detail

Detailed information of CAB4039935.1 in Paramuricea clavata

Genomic Location: pcla8_s030598:1...3754
NR annotation: CAB4039935.1, Heterogeneous nuclear ribonucleo A0 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-PACLA_8A047609

TTTACGatttattttgacaaaataCTGCGACGTTAAGGTTAGTTTTATTGAAATAATCTAGATAATAATGAAATGGGGCTTTGTTTAGCGTATTTGTGTAGTTTAATCATGCGTatgttgtatttttatgatGAAAAAACCGTCGTTAAAATTTGTGTCATTGAGCGTCGTGCTGCGAATTTCCACCAAGTTTGAAAATGAAAATGCTTTTTTTTACGTTTTATTCTGTAGATGGCCGAAGACCAAGCTGATAGAGAATTGAAATCCTTATGCAAGTTGTTCATAGGAGGAATTCCTCGTACAATAACCGACGAGGAGCTCGCGGAACACTTTCTGCAGTTCACCGAAGACGACTCGTTAAACGACTGTGTGGTCATAAAAGACGAGATGAAAAACTCGCGTGGATTCGGGTTCGTAACCTACAACAAGTTAAGCGATACGGACAACTGTCTAGCGAATCGTCCACATAATCTCGGGACGAAGGAGGTTGAAGTCAAGCATGCCATACCTCGAGATGAAAAAATCGAAACCAACCATGTTCGCACCAACAAAATTTTTGTTGGCGGTCTCTCCAAAGAGGCGACGGAAGAGGAGCTCACCAGTGTCATTGAGAACCACGTGTTAGCCGCCGGAGAGAGCCTGAATGCGAAAATCACGAAATGTGACATCATCAAAGAGAAGGAGACCGGTGAGCCTCGTGGATTTGCCTTCCTCGACATGGCGTCCGAGGATGATGCGGATAAAGTCGTGATCGTCAAGCACTTCGACATTGCAGGTCGCCGGGTAGAGTTGAAGAAGGCCGAGCCGAAAGGTGGTTCCGGCGGAGGTAGAGGTGGGGGTAGTCGAGGCAGAGGTGGTCGCGGTGCACGAGGTGGTGGTGGTGGCAGAAATACTAGCCAGTTTGGTGGTGCAGGTGGATGGGGCTTTAATGATCAGTTTGGTGGTGCTGGTGGTGGTTTTACTATGGATTATGGTGCGTACGGTGGTTATGGTGGTGGTGGATATGGATTTGATAGCATGGGAGCATTCAACCAATATGCACAGCAAGCTTCGAGTTATGGACCATCACGAGCAGCAACTGGACGCTACCGTGGACGCAATGGcccatattaaatatttactcTCTTTGTAAGTATAGATAATGTGTGTTGTTTATGTTACAATAGAACATTCAGTTGAATTGAAGTGTTCAACACCCAATAAGTTAGCACTGTCAATCCTAACTGATAATCATGACCTTGATAATAATGACATTGATCATTTTATGGTAGAATATGGAAAATTGCCCTGCAAATCAGTTTGATACAGTGCTAATTTATTGGGGCTTGTCCACTCAATTGATGCTCAAATTCCATGTTTTCAGTACTAACTAGTGTGTAGCAAGTTGGAATAAGCACTTTTTCCATGTACTTTATAACTATAGCGGTCAGTACTGTGGTTAAACTATTAGtctttcttttgtctttttAGCGACAAGCAGATATGCCTTGTATGATTTCGAACtaaaatttctattttaatacTTTAGGTCTCTAGCAATCTTGTTCAGTCAATTGGTTAAACATTAAGTCTCAAGAAATAGGAACCTAGCCCGTAGGCTAAGGCTGAAGAATTACTCTCTAGAACTCAGAAGCAGACTACAAGATTAAGCAGACTTTGGATGCAGAGCATTTGAGCCTAGGTCAAATGAGGAAATGATGAGGACAATTGAGAAATCTTGGTCATTTTATCAACTTTCTATGTAGACGTTAACAGTTTTAAGTCAATTTTAAGtgtaacatattttattaaaagtgattAAGTGTGAGTGCCCACAGTTTagttcatttatattattttgtaaggttgaaattgtttttgattggtTAAATAATTTTGAACATCCATATAATTGGTGGTGGAAAAGTGATTTTTCCCCAAAGAGACAGGTTGAAAGATATGGATATATGACAGAAATATGCACATCAAAGTAAAACTGCAAAACTAACCAAATCACAAAAATGTAACAGGTCAATTCAACAAGACTCTGGGGACTAGAGACAGCCAATTTGGTTAAAATACAAACAGATTTTAGAAGAGTTTGTTTATGTATCCCAGtgcaaaaatgaaaaacaattttctATTGTTAGACCCATTGCTGTAAGAAACAGCGGGATATAGttttgtgtgtatatatgttCGGAACAAGTTTGGCCGTTCCAGTGATGTGGAATTTGTTGGTtcaaaatttgtattgataatttGGTAATGGCTTTCTCAAGTGTTCAAATTATTTGGAAGGGAAACTGACAGTAAAAAATTGAGTTGACCAAAATAATAACCTCGCAAGAAGTTCCAGGAGCAATTCACTAAGGTGTATAGTTGTAACCTGCTATTGATGTTTTTTGCTTGCAAGTAGGTACTTCAGTGTGCAAAATGACACACAAGGTTTATCTTAGGTTGATTCAGAATTGTTAAGGTTAGACTAGAAATGCATGCCCTCCTTAAGTGGACATTGACCTTTTGGTATCTAGGATCATCTGAGTGAATTAAATAGTACCCTGTTTAATATATGGATGAATGAGAAACATTCACTTATAAACCTAAATTGTGCAGTCTTAGATCAAGAGGGATTGGAACAATTGTTTAATTTGCCAATTAAACCAAATTAGTCCCAATTTTCTCCATTCAATGTTTTTATCTCTATCATCAACCCAGCACTCTCCAAGTGACATGTAAAATAGGACACATTGGGGTGCAATACAACTTagaaaggcctgtttacacttgcaatttatGCAGTGATTTTAGGTGTGATTTTCTTATCGTGGATGAGTTcggaatgttcagatgagggttcATATACTCTACTTGATCACATGCTTCAGAAGTGCCAAATACCACATGAAGTTTTGATTGGCCAGTCTGGATCAATCAGCTGTCAGTGCATATATCATTACTGGGCTTGCAAATTGAAACTTAGTGAGAATAACAGGCATTTCTAAAAAATAGAACTTGTTAAGTTAGTATCTGTAATGAAGTTTAAAGTTTTTCAAGAAAACTATGTTTTAATGGCAAGCCTAATTAGGATTGTGCTTATCTTCAAAGCGGAGTGTTGTACTTTGGTATCCAAACTGTAGTTGCATACATGAAACAAATTAGGCAAATAaacatactgtatacagtataactATTTTTGTGAATGTGTGCTCATGAACATGTATTTTCCAATTAATAGCTCCAGGATCCTATCTGAGGAGCAATGGTCGACAGCAGTGGAAAATGGAATATTGAAGAAGAAAGTCAATAATTCTACACATTGCAGTCCATACATGTCAATAGAATAACAGTCCTAACAGAATTTGTACCATTaggaaatttagaattttataaCAATGTCAAACAGTCACTTTGATAAGTAAAATGGTAGAGAAACAAGCAGGTAGTTTATGAGTCTACCCATTACAGCAACAATACAAATCACCTAGTGTTATATGGCCCACTGCAGCTAAGTAAATTTTAGAATATTATATTCTAGCTTCCCAGATGAGCCTTCCACAGCAATTGgccttcaaaatattttttgtttatttattggGTACATTGCAGTCATTTCAATTATTTGAGGTTTAGTGGTTGACATGACACATAAAGTAGCAAACACTGAACTTATATTATGGAATTCGCCATCAATAGCTGTACGAAATTTGGTGAACACAGGACAATTTATGTGCAGGTGTAAGtattttttctttatattttggtCAGCATGTGG

Protein

Uniprot

Uniprot term	Description
Q98SJ2	DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1
P48809	Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2
Q96EP5	DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala