Detailed information of CAB4040287.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4040287.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB4040287.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003166 (this species only)

 Pfam domain
No Pfam domain signature was detected for CAB4040287.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR039164
all species →		FamilyE3 ubiquitin-protein ligase UBR1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21497
all species →		UBIQUITIN LIGASE E3 ALPHA-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071596
all species →		Biological Processubiquitin-dependent protein catabolic process via the N-end rule pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB4040287.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4040287.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 0 0.00 0.00
apical branchlet · Temperature treatment at T0 6 0 0.00 0.00
apical branchlet · Temperature treatment at T25 5 0 0.00 0.00
apical branchlet · Control at T0 4 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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