Genomic Location: not available for this species
NR annotation: CAB4041073.1, surfeit locus 1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4041073.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A4IHH4 | Surfeit locus protein 1 OS=Xenopus tropicalis OX=8364 GN=surf1 PE=2 SV=1 |
| O57593 | Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes OX=31033 GN=surf1 PE=3 SV=1 |
| P09925 | Surfeit locus protein 1 OS=Mus musculus OX=10090 GN=Surf1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007308 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02104 all species → | SURF1 | SURF1 family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002994 all species → | Family | Surfeit locus 1/Shy1 | Interproscan |
| IPR045214 all species → | Family | Surfeit locus 1/4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23427 all species → | SURFEIT LOCUS PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0033617 all species → | Biological Process | mitochondrial cytochrome c oxidase assembly | Interproscan |
CAB4041073.1.Transcript abundance of CAB4041073.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
